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  • 2011 Volume 27 Issue 6
    Published: 20 June 2011
      

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  • WANG Hai, ZHANG Qian, FANG Xiang-Dong
    Chinese Journal of Biochemistry and Molecular Biol. 2011, 27(6): 493-498.
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    Insulators play an important role in regulating the proper temporal and spatial expression of eukaryotic genes. Insulators are classically defined by their ability to perform two key functions. First, they can block enhancer function. Recently, the decoy, barrier and looping models have been proposed to account for the enhancer blocking mechanisms of insulators. Second, insulators can serve as a barrier to heterochromatin. This barrier function is thought to involve the recruitment of histonemodifying enzymes. Many typical insulators have been defined, including scs (specialized chromatin structures), scs and gypsy in Drosophila, DNaseⅠhypersensitivity site (cHS4) upstream to chicken β globin, and ICR (imprinting control region)/DMR (DNA methylated regions) elements in mouse and human Igf2/H19 genomic regions. Many transcription factors can interact with insulators and are involved in their functions, however, CTCF (CCCTCbinding factor) is the only insulator related transcription factor identified in vertebrates. Here, we review these processes and discuss the recent results of insulator prediction and assessment by genomics technology. We also summarize strategies to identify novel insulators using bioinformatics methods.
  • JIE Jin-Lan, CONG Fang-Di
    Chinese Journal of Biochemistry and Molecular Biol. 2011, 27(6): 499-504.
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    Lipases are a kind of significant hydrolytic enzymes, which have significant application in some areas such as industrial production, medicine and scientific research.Most of lipases have a section of αhelix commonly named ‘lid’ over their active sites, which endow them with the special catalytic activity, interfacial activity, on the water/oil interface, but with low activity or without activity in pure water or oil. Because the interfacial activity is closely related to the lid composition, size, conformation and environment, it is very critical to make out the connection between lid and interfacial activity for development and utilization of lipases, and then the science problem on the role of lid playing in enzymatic catalysis has been unweariedly explored by biochemists for a long time. In this paper, we review the literatures on diverse lipase catalysis induced by lid conformational change, positional motion, compositional difference and artificial deletion, and expect that the review would help to understand the relation between the lid and the catalysis of lipases.
  • XIE Zhao-Hui
    Chinese Journal of Biochemistry and Molecular Biol. 2011, 27(6): 505-510.
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    RNA polymerase (RNAP) plays an important role in maintaining transcriptional fidelity, including substrate selectivity and proofreading. The high level of substrate selectivity is achieved by correct basepairing and inducedfit, while pyrophosphorolysis and intrinsic nuclease activity of the RNAP both contribute significantly to proofreading. Now, the study of RNAP has exceeded beyond its transcriptional function, and extended to some other fields. The present study is mainly concerned with the advances of transcriptional fidelity and the comparison among RNAP, DNA polymerase, aminoacyltRNA synthetases and ribosome. The application of RNAP in novel drug or novel drug target development and its application perspective are discussed in the study.
  • REN Jing-Yi, XU Ning, HAN Guan-Ping, CHEN Hong
    Chinese Journal of Biochemistry and Molecular Biol. 2011, 27(6): 511-515.
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    MicroRNAs (miRNAs) are short(~22 nt),noncoding RNAs that control gene expression on the posttranscriptional level by binding to target mRNA,leading to degradation or translation repression. miRNAs are involved in many biological processes under physiological and pathological conditions including cardiovascular diseases. Recent studies showed that miRNAs play an key role in the regulation of angiogenesis, inflammation and lipoprotein metabolism. miRNAs are closely related to atherosclerosis plaque destabilization and rupture. In this article, the research progress of miRNAs in the pathogenesis of atherosclerosis was reviewed to provide the basis for the study of the role of miRNAs in the pathogenesis of atherosclerosis and the application of miRNAs as a diagnostic tool for cardiovascular diseases.
  • CHEN Zhong-Bin, ZHANG Bai-Ling, CHEN Jian-Fei, XING Ya-Ling, FENG Li
    Chinese Journal of Biochemistry and Molecular Biol. 2011, 27(6): 516-523.
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    Porcine epidemic diarrhea virus (PEDV) is an animal coronavirus that causes pig intestinal diseasesporcine epidemic diarrhea (PED).To date, it is not clear that how PEDV interacts with the host antiviral innate system and what is the molecular mechanisms that regulate the host innate antiviral immune responses. Based on the authors recent studies on human coronaviruses, this review will focus on recent advances in our understanding of the genome replication and viral protein functions of PEDV, especially the potential mechanisms of PEDV interaction with the host innate antiviral immune response. Similar to human coronaviruses, PEDV papainlike protease (PLP) is a multifunctional protein with protease activity, deubiquitinase (DUB) activity and interferon antagonism activity. PLP2 domain is a novel PEDVencoded DUB and interferon antagonist from animal coronavirus. These studies will help to illustrate the mechanisms of PEDV regulation of the host innate antiviral immune responses and disease pathogenesis, and will also provide the fundamental theoretical clues for the development of novel immune control measures for animal coronavirus infection.
  • LU Zhao, ZHENG Shao-Peng, NIU Jing, JIA Hong-Zhi, DING Wei
    Chinese Journal of Biochemistry and Molecular Biol. 2011, 27(6): 524-532.
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    Human BATF2/SARI is a novel tumor suppressor gene, which contains a basic leucine zipper protein domain as BATF and BATF3. Except for the suppression of interferon-beta induced AP-1 transcription activities, the functional characteristics and the anti-tumor mechanism of BATF2 are largely unknown. In this study, we demonstrate that BATF2 induces apoptosis of tumor cells by inhibiting p53-associated NF-κB activity. Real-time quantitative PCR (RT-qPCR) showed that BATF2 was highly expressed in A549 (p53-wild-type) and HeLa (p53-wild-type) cells but lower in H1299 (p53-null) cells. Combination of gene transfection with TUNEL and MTT assays revealed that overexpression of BATF2 induced apoptosis, thereby inhibiting cell proliferation, which was correlated to p53 expression. Analyzing the activities of report luciferase, whose expression was driven by regulating sequences containing AP-1 and NF-κB sites, respectively, showed that overexpression of BATF2 inhibited both AP-1 and NF-κB transcriptional activities, in which the BATF2-inhibited effect on NF-κB but not AP-1 activity was related to p53. Knocking-down of p53 by RNA interference in A549 and HeLa cells could abolish the inhibition of NF-κB activities by BATF2. These results indicate that BATF2 can suppress the transcriptional activities of AP-1 and NF-κB to induce apoptosis and inhibit cell proliferation, and that suppression of NF-κB activity by BATF2 is correlated to p53. These data also suggest that the mechanisms underlining BATF2 inhibition of cell growth might be rather sophisticated.
  • GAO Xiao-Juan, JI Hong, CHANG Zhi-Guang, LIU Yue-Guang, YANG Qiu-Mei, YANG Gong-She
    Chinese Journal of Biochemistry and Molecular Biol. 2011, 27(6): 533-539.
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    To study the interaction and function of peroxisome proliferator-activated receptor-γ coactivator-1β (PGC-1β) and sterol regulatory element binding protein 1c (SREBP-1c) during porcine preadipocyte differentiation, the expression of PGC-1β and SREBP-1c were detected by Western blotting and immunofluorescence. The regulation of PGC-1β on the SREBP-1c and the binding activity between the two proteins in vivo were analyzed using shRNA technology and co-immunoprecipitation. The results showed that PGC-1β and SREBP-1c increased gradually during porcine adipocyte differentiation, and the two proteins located both in the nucleus and cytoplasm. PGC-1β interference significantly decreased (P<0.05) the expression of SREBP-1c and C/EBPα, an adipocyte differentiation marker gene, and reduced the accumulation of triglyceride. Further analysis showed that PGC-1β and SREBP-1c could be co-immunoprecipitated. We conclude that PGC-1β interacts with SREBP-1c, and may regulate adipocyte differentiation.
  • ZHANG Xiu-Mei, CUI Ya-Zhou, ZHOU Xiao-Yan, YU Fang-Cang, HAN Jin-Xiang
    Chinese Journal of Biochemistry and Molecular Biol. 2011, 27(6): 540-547.
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    The osteogenic differentiations of ligament fibroblasts are closely associated with ectopic ossificationrelated diseases, such as ankylosing spondylitis, but the exact mechanism remained unclear. To evaluate the microRNA and mRNA expression profiling of ligament fibroblasts during its osteogenic differentiation, fibroblasts from ligments were isolated and cultured in osteogenic medium containing dexamethasone, ascorbic acid and β-glycerol phosphate. Two osteoblastic markers, Osteocalcin and Runx2, were detected by RT-PCR at day 0, 7, and 14. Microarray analyses were performed to profile the expression of microRNAs and mRNAs during the process of osteogenic differentiation. Real-time quantitative PCR (RT-qPCR) and Western blotting were used to for further confirmation following bioinformatic analyses. The results showed that 66 microRNAs and 640 mRNA were upregulated; 94 microRNAs and 744 mRNA down-regulated at day 7. At day 14, 58 microRNAs and 781 mRNA were up-regulated, and 96 microRNAs and 603 mRNA down-regulated. The RT-qPCR and Western blot confirmed that miR-29b were up-regulated, while TGFβ3 expression down-regulated. As miR-29b can interact with the 3′-UTR of TGFβ3 mRNA to block its translation, and TGFβ3 suppresses osteoblastic differentiation by either reduce Runx2 cellular protein and activity or induce to undergo Smurf-mediated Runx2 degradation, thus lead to the promotion of osteoblastic differentiation. The microRNAs and genes changed during fibroblast osteogenic differentiation were mainly involved in BMPs, Wnt and Ihh signal pathways, suggesting that besides of some unique characteristics in the gene expression profile, ligment fibroblasts might share a common pathway with osteoblasts during osteogenic differentiation.
  • DING Wei, LI Qing-Zhang, WANG Chun-Mei, LI Ye, CUI Wei, FENG Li
    Chinese Journal of Biochemistry and Molecular Biol. 2011, 27(6): 548-553.
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    MicroRNAs(miRNAs) is a group of noncoding small RNAs about 22 nucleotides, which can induce tumor generation, cell proliferation and allelotaxy through the regulation of some receptor expression. In this study, the Igf-1 3′UTR luciferase reporter vector was constructed. The Dual-Luciferase Reporter Assay System was used to quantitate the reporter activity. Liposome transfection and real-time PCR were used to observe the change and the expression of miR-129-5p on mouse mammary epithelial cells. The cell proliferation and viability was done by cell viability analysis and the changes of the Igf-1 detected by Western blotting. So it was proved that miR-129-5p expressed highest in virgin mammary gland of mouse. The Igf-1 3′UTR luciferase reporter vector has been constructed successfully. The luciferase activity of the reporter can be suppressed by miR-129-5p (P <0.01). After transfection, miR-129-5p expression was decreased (P <0.01), insulinlike growth factor (Igf-1) expression was increased (P <0.05), cell proliferation and vitality was enhanced(P <0.01). The results suggest that miR-129-5p probably inhibit mammary epithelial cells and lactation by suppressing expression of Igf-1.
  • LIN Ya-Qiu, LI Rui-Wen, ZHENG Yu-Cai, JI Hong, LIU Mao-Qi
    Chinese Journal of Biochemistry and Molecular Biol. 2011, 27(6): 554-560.
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    The cDNA sequence of heart fatty acid binding protein gene (H-FABP) was cloned from Schizothorax prenanti and Cyprinus carpio. The expression profile of H-FABP mRNA was analyzed using semi-quantitative RT-PCR. The intramuscular fat (IMF) content was measured to compare the function of H-FABP gene in fat deposition in S.prenanti and C.carpio which has different habitat. The results showed that the obtained cDNA fragments had a 402 bp ORF encoding 133 amino acids totally identical between Schizothorax prenanti and C.carpio, and the homology of amino acid sequences were 71.3% to 90.0% with Danio rerio, Salmo salar, Oncorhynchus mykiss, Fundulus heteroclitus and Anguilla japonica, respectively. The H-FABP gene expression profiles were observed in heart, muscle, fat, liver, brain, spleen, kidney tissues and gill in both species. The expression of H-FABP gene in live was significantly higher than that in other tissues studied (P<0.05), and high level was also exhibited in heart. The expression profile of H-FABP gene in muscle differed between S.prenanti and C.carpio, its expression level increased along with the growth in S.prenanti, showing higher mRNA level in fish with larger weight(500 g) than in smaller weights (50~60 g and 120~130 g, P<0.05), and its expression profile showed significant positive correlation with IMF content (R=0.370, P<0.05). However, the expression level of H-FABP gene in muscle decreased with the growth in C.carpio, showing higher mRNA level in fish with smaller weight(50~60 g) than in two larger weights (P<0.05), and exhibited significant negative correlation with IMF content (R=-7.083,P<0.01). The results suggest that the difference in linkage between the expression of HFABP gene and IMF content in muscles of S.prenanti and C.carpio might relate to their different habitat.
  • WU Su-Ge, YANG Wu, ZHOU Lu-Ming, ZHAO Bo-Sheng
    Chinese Journal of Biochemistry and Molecular Biol. 2011, 27(6): 561-567.
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    To study the expression pattern and function of the planarian Dugesia japonica p53 homologue (Djp53), whole-mount in situ hybridization (WISH) with digoxigenin-labeled RNA probes and RT-PCR were used. The results showed that Djp53 was strongly expressed in the blastema at 1, 3, 5 days during regeneration after amputation with a peak level at day 3. Reduced expression was detected throughout the parenchyma of intact adult and regenerated tissues at day 7 and 10, with a spatial localization to the stem cells.When Djp53 was silenced by RNAi, significantly decreased expression was observed in intact planarians. Djp53 depleted planarians failed the normal regeneration and exerted a rough eye phenotype at day 15 after amputation. Our results suggested that Djp53 was essential for planarian regeneration and effected blastema formation at early stages, as well as in regulating neoblasts migration, proliferation and differentiation, which were required for stem cell maintenance at late stages of regeneration or adult development of planrian.
  • DING Jing-Jing, REN Xue-Ling, SONG Yu, ZHANG Dan-Dan, ZHANG Zhen-Zhong, ZHANG Yun
    Chinese Journal of Biochemistry and Molecular Biol. 2011, 27(6): 568-573.
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    RNA interference (RNAi) is a powerful tool to effectively silence gene expression in a sequence-specific manner at the post-transcriptional level. Small hairpin RNAs (shRNAs) under the control of an RNA polymerase Ⅱ promoter provide an alternative approach to efficiently induce tissue-specific RNA interference. However, little is known about whether not-fully complementary shRNA from the RNA polymerase Ⅱ promoter induce RNA interference. In this study, we observed mutation-shRNA targeting GFP could induce RNAi efficiently, while deletion-shRNA targeting hTERT couldn’t. This result provides further evidence of the potential effects of notfully complementary shRNA.
  • JIN Wen, LI Zan, HUANG Zhi-Yong, GAO Mei-Qin
    Chinese Journal of Biochemistry and Molecular Biol. 2011, 27(6): 574-581.
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    To observe the effect of osteopontin(OPN) silencing on the growth of human glioma U251 cells of nude mice in vivo and to investigate the mechanism of OPN gene on the proliferation and invasion of glioma U251 cell. LV-N-OPN/U251 cells transfected with blank lentivirus vector, LV-OPNshRNA/U251cells transfected with shRNA lentivirus vector osteopontin, and untransfected U251 cells were injected into the oxter of the nude mice, respectively to establish the xenograft. The excised tumor masses on the 21st day, the volume and the weight of tumors were checked. Histopathological changes were observed. The mRNA and protein expression of OPN,urokinase type plasminogen activator (uPA),matrix metalloproteinase(MMP-2 and MMP-9) were measured by RT-PCR and immunoblotting. The microvessel density(MVD) and vascular endothelial growth factor(VEGF)were detected by immunohistochemistry. OPN interference RNAinhibited OPN expression,cell proliferation and invasion, both volume and weight of tumor were decreased obviously. In addition, the expression of uPA, MMP-2 and MMP-9 were significantly decreased, the expression of MVD and VEGF were also significantly lower. The results indicated that OPN might increase the abilities of invasion of glioma by degrade extracellular matrix to activate uPA,MMP-2, MMP-9 and to promote angiogenesis of tumor.
  • SHI Xin-E, ZHENG Xue-Li, LIU Yue-Guang, YUAN Yuan, ZHANG Hui, YANG Gong-She
    Chinese Journal of Biochemistry and Molecular Biol. 2011, 27(6): 582-588.
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    Forkhead box transcription factor O-1(FoxO1) is an important transcription factor which regulates growth, metabolism and cell differentiation of skeletal muscle, and it has a key role in the transformation of muscle fibers. To further investigate it’s effect on muscle fibers type, the lentivirus mediated short hairpin RNA (shRNA ) targeted to FoxO1 gene was constructed. After the pig myoblasts were infected with the constructed lentivirus, the expression of Forkhead box transcription factor O-1(FoxO1) is an important transcription factor which regulates growth, metabolism and cell differentiation of skeletal muscle. FoxO1 plays a key role in the transformation of muscle fibers. To study its effect on muscle fibers type, the lentivirus mediated short hairpin RNA (shRNA) targeted to FoxO1 gene was constructed. After the pig myoblast was infected with the constructed lentivirus, the expression of FoxO1 and myosin heavy chainⅠ(MyHCⅠ)were evaluated by real-time PCR and Western blotting. The sequencing results suggested that the vector of lenti H1 RNAi FoxO1 was successfully constructed,and the functional titer of concentrated virus was 8×107 U/mL. Compared with control group,the FoxO1mRNA and protein levels in siFoxO1 group were reduced by 58% and 77%,respectively. The expression of MyHCⅠin mRNA level was upregulated by 258 folds. These results indicated the lenti H1 RNAi FoxO1 vector was constructed successfully, and FoxO1 gene silence promoted the expression of MyHCⅠ.
  • WANG Chang-Dong, ZHU Yong, YUAN Cheng-Fu, BU You-Quan, YI Fa-Ping, LIU Ge-Li, SONG Fang-Zhou, HU Ping-Sheng, Tomas Hokfelt
    Chinese Journal of Biochemistry and Molecular Biol. 2011, 27(6): 589-592.
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