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  • XU Sheng, ZHOU Lu-Yu, WANG Kun
    Chinese Journal of Biochemistry and Molecular Biol. 2018, 34(2): 117-128. https://doi.org/10.13865/j.cnki.cjbmb.2018.02.01
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    Circular RNA (circRNA) is an endogenous noncoding RNA molecule with covalently closed cyclic structure which does not have 5′ end cap and 3′ poly (A) tail. It is found to be evolutionary conservative and stable with tissue specificity. According to the different sources of the sequences, circRNA can be divided into three types: exon circRNA, intron circRNA, and exon-intron circRNA. With the rapid development of bioinformatics and continuous innovation of high-throughput sequencing technology, a large number of endogenous circRNA, which was mainly distributed in the cytoplasm, has been found in eukaryotic cells. CircRNA, which has unique sequence structure, acts as microRNA sponge, regulates selective splicing or transcription, binds to RNA-binding proteins and produces pseudogenes by rolling translation. It is involved in cancer, diabetes, nervous system diseases, atherosclerosis and other diseases. Numerous studies have shown that circRNAs may become potential targets and clinical diagnostic markers for human disease. This review is a detailed study of the latest progress of circRNA research, including its formation, characterization, biological function, research methods, research database and its relationship to the disease.
  • KUI Si-Yuan, MENG Chang, LI Shu-Yan
    Chinese Journal of Biochemistry and Molecular Biol. 2018, 34(2): 129-136. https://doi.org/10.13865/j.cnki.cjbmb.2018.02.02
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    Long non-coding RNAs (lncRNAs) are a class of noncoding transcripts with lengths longer than 200 nucleotides lacking of protein-coding capability in human genome. LncRNAs can regulate gene expression at multiple levels, including chromosome remodeling, transcription and post-transcriptional processing. In addition, dysregulation of lncRNAs plays an important role in many human diseases, including cancer. Here, we reviewed the categories, functions of lncRNAs and the relation with diseases, and discussed the therapeutic strategy of lncRNA in clinic application based on gene editing, stem cell modification and the interaction between lncRNA, miRNA and protein.
  • LI Ying-Ying, HUANG Bo
    Chinese Journal of Biochemistry and Molecular Biol. 2018, 34(2): 137-141. https://doi.org/10.13865/j.cnki.cjbmb.2018.02.03
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    The highly conserved Elongator complex (Elp) is composed of six subunits,Elp1-6. It is involved in various cellular processes, including transcriptional elongation, exocytosis, telomeric gene silencing and DNA damage response, neurological and developmental dysfunctions, etc. Accumulating evidence shows that Elp mediates tRNA modification to exert cellular functions. In human beings, a mutation in the ELP1/IKBKAP gene leads to familial dysautonomia (FD) and genetic variations in ELP2,ELP3, and ELP4 are associated with many other neurodegenerative diseases. Here we review the current status and progress of Elp structure, Elp functions in tRNA modification, and Elp-related diseases.
  • LI Wei-Wei, ZHU Ying
    Chinese Journal of Biochemistry and Molecular Biol. 2018, 34(2): 142-152. https://doi.org/10.13865/j.cnki.cjbmb.2018.02.04
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    Abnormal histone methylation is a hot area of research in tumor epigenetic. It associates with biological behaviors of tumor cells, and is involved in cancer initiation, progression and pathological outcomes. The SET and myeloid-Nervy-DEAF-1 (MYND) domain-containing protein (SMYD) family is a lysine methyltransferase, and it regulates multiple downstream target genes and cancer-related signaling pathways by lysine methylation on histone and non-histone proteins. The SMYD family participates in the whole process of tumor development, including proliferation, differentiation, apoptosis, angiogenesis, migration, invasion and chemotherapy sensitivity, etc. As one of the new molecular tumor markers and therapeutic targets, the SMYD family is of great clinical significance. In this paper, we review the role of the SMYD family in carcinogenesis, focusing on transcriptional regulation, biological function, clinical significance and its potential as new targets for tumor therapy.
  • SHI Ting-Yu, WANG Yuan-Yuan, DONG Xing-Gao
    Chinese Journal of Biochemistry and Molecular Biol. 2018, 34(2): 153-161. https://doi.org/10.13865/j.cnki.cjbmb.2018.02.05
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    The inorganic polyphosphate (polyP), a linear polymer of hundreds of orthophosphate residues, plays various biological function. Up till now, all information about polyP was obtained from multiple models organisms, and the results differ. In order to learn the general biological role of polyP, herein we summarize the biological function of polyp related to the central dogma, particularly in DNA replication, transcription, translation, post-translational modifications, protein folding and degradation. We hope it will provide further insights into the biological function of polyP.
  • WANG Yu-Qing, GAO Feng-Xin, ZHANG Xiao-Ning
    Chinese Journal of Biochemistry and Molecular Biol. 2018, 34(2): 162-169. https://doi.org/10.13865/j.cnki.cjbmb.2018.02.06
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    Seminal extracellular vesicles (EVs) are membranous vesicles that are secreted in semen. According to the secretion organ, EVs are usually classified into epididymosomes and prostasomes. EVs may fuse with the sperm membrane, thus regulating sperm activities by conveying their contents to the sperm recipient or by activating signaling pathways. They carry a range of biologically active substances, which have different effects on sperm. A variety of proteins have been identified in seminal EVs, and many have been shown to affect sperm motility and acrosome reaction, and participate in clearance of impaired sperm cells and cell-cell adhesions. Lipids in seminal EVs modulate sperm cell membrane fluidity, while nucleic acids mediate the immune response, trans-generational transmission as well as male infertility. Ions in seminal EVs serve as co-factors for several enzymes, playing important roles in regulating enzyme activity and the seminal microenvironment. This article will review the function of seminal EVs as well as their associated contents. We aim to provide a reference for future research.
  • Research Papers
  • LI Rui, LI Yi-Yang, LI Duo-Hui, SONG Wen-Wen, XIAO Jian
    Chinese Journal of Biochemistry and Molecular Biol. 2018, 34(2): 170-176. https://doi.org/10.13865/j.cnki.cjbmb.2018.02.07
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    Nerve growth factor (NGF) has been verified to facilitate neural repair and accelerate the regeneration of axon and myelin sheath. However, there are few studies regarding to the effects of NGF in regulating peripheral nerve injury (PNI) at the early stage. This work mainly investigates whether NGF is able to recruit Schwann cells (SCs) to accelerate myelin debris clearance and its molecular mechanisms at the early stage of PNI. Our study administrated NGF at the injured sciatic nerve for 5 consecutive days. The degree of myelin debris clearance, the rate of apoptosis cells and the expression of endoplasmic reticulum stress (ERS) related proteins were detected by corresponding assays. Immunofluorescence staining analysis showed that NGF significantly accelerated the clearance of myelin debris and promoted the proliferation of SCs (46.33 ± 5.68 vs. 66.69 ± 8.76, P< 0.05 for MPZ and 47.58 ± 4.52 vs. 37.69 ± 2.50, P< 0.01 for GFAP). TUNEL immunohistochemistry confirmed that NGF could effectively inhibit SCs apoptosis (25 ± 4 vs. 37 ± 6, P< 0.05). Western blotting result showed that the expression of ER stress associated proteins was significantly up-regulated in PNI group. These elevated levels were significantly reversed by administrating NGF for 5 days (1.03 ± 0.03 vs. 1.24 ± 0.07, P< 0.01 for PDI; 1.16 ± 0.16 vs. 1.48 ± 0.10, P< 0.05 for GRP-78; 1.33 ± 0.11 vs. 1.76 ± 0.17, P< 0.01 for Caspase-12; 1.01 ± 0.05 vs. 1.39 ± 0.16, P< 0.01 for CHOP). The present study clearly demonstrated that treatment with exogenous NGF reduced the apoptosis of nerve tissue cells and accelerated the removal of myelin fragments via the inhibition of excessive ER stress, highlighting the protective role of NGF in ER stress and apoptosis of SCs, which may be a useful therapeutic strategy for PNI.
  • YUAN Xin, SHE Qiang, DU Jian-Lin
    Chinese Journal of Biochemistry and Molecular Biol. 2018, 34(2): 177-182. https://doi.org/10.13865/j.cnki.cjbmb.2018.02.08
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    The T-box transcription factor 18 (Tbx18) plays an essential role in normal development of the urinary system. It has been identified that Tbx18-positive cells contribute to multiple components of the mature urogenital system. However, it remains unclear whether Tbx18-positive progenitors play a specific role in the development of urologic fat tissues. Here we applied the Tbx18 lineage tracing model of Tbx18Cre/Rosa26EYFP and Tbx18Cre/Rosa26LacZ mice to identify the differentiation capacity of Tbx18-expressing progenitor cells in the urologic system. X-gal staining ofthe urinary tissue revealed that the X-gal protein is detected in the renal capsule, the ureter and perirenal fat tissue and that Tbx18-expressing precursors contribute to the renal capsule, ureter and perirenal adipocytes in Tbx18Cre/Rosa26LacZ fate-mapping mice. Immunostainingofthe kidney and perirenal tissue revealedsome yellowfluorescentprotein-positive(YFP+)cells express Perilipin, the marker for adipocytes and that Tbx18-positive progenitors contribute to perirenal adipocytes in Tbx18Cre/Rosa26EYFP fate-mapping mice. Thus, our analyses identified the multi-differentiation capacity of Tbx18-expressing progenitors in the urinary system. Further researches are needed to study the capacity of Tbx18-expressing progenitors to differentiate into adipocytes and other components of the urogenital system in models of kidney injury.

  • GUO Wan-Ying, SHEN Huan-Huan, LIU Qi-Tao, ZHENG Yue-Ting
    Chinese Journal of Biochemistry and Molecular Biol. 2018, 34(2): 183-188. https://doi.org/10.13865/j.cnki.cjbmb.2018.02.09
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    The recombinant expression of heterologous proteins in prokaryotes provides a highly efficient and economical method for production of bioactive proteins, and is therefore widely used in molecular biology. However, prokaryotic recombinant expression systems are often limited by poor solubility and low expression of viral proteins. Therefore, various fusion tags are used to increase solubility and quantity of the desired recombinant protein. To our knowledge, the present study is the first to utilize the E. coli 2-keto-3-deoxy-6-p hosphogluconate (KDPG) aldolase (EDA) tag to improve the expression of soluble recombinant porcine circovirus 2 capsid protein (PCV2-CP). We compared the effects of maltose binding protein (MBP), the glutathione-S-transferase (GST), and EDA tags on protein expression, solubility, and stability. We found that the use of the EDA tag enabled a significant increase in both the expression level and stability of the recombinant PCV2-CP protein. These results show that EDA represents an efficient tag for the improvement of the solubility and stability of PCV2-CP expressed in E. coli. Our findings support that the EDA fusion tag could be used as a viral protein fusion tag.
  • HUANG Yang, FENG Yan, YU Liang, ZHAO Zi-Liang, ZOU Jun-Qing, NI Jian-Lin, WANG Zuo-Gang
    Chinese Journal of Biochemistry and Molecular Biol. 2018, 34(2): 189-196. https://doi.org/10.13865/j.cnki.cjbmb.2018.02.10
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    EGFR-TKI targeted therapy has been playing an important role in the treatment of non-small cell lung cancer (NSCLC). However, unavoidable therapeutic resistance significantly limits the clinical efficacy of TKI. Receptor tyrosine kinase-like orphan receptor 1 (ROR1) is a member of the type I receptor tyrosine kinase family and plays an important role in cancer development and progression. The aim of this work is to investigate the effect and molecular mechanism of ROR1 on gefitinib resistance in NSCLC. EGFR-TKI-resistant HCC827/GR cells were established from parental HCC827 cells by continuous exposure to gefitinib. ROR1 expression on the mRNA and protein levels was detected by qRT-PCR and Western blot respectively. Influence of ROR1 to gefitinib resistance in HCC827/GR cells was assayed by ROR1 shRNA in vitro. Influence of ROR1 to gefitinib resistance was assayed by ROR1 overexpression in HCC827 cells in vitro or by ROR1 shRNA in HCC827/GR cells in xenograft mouse model. ROR1 downstream signal molecules were detected by Western blot. We found that the mRNA and protein levels of ROR1 are significantly increased in HCC827/GR. Knockdown of ROR1 significantly increased gefitinib sensitivity of HCC827/GR cells and gefitinib-induced cell apoptosis in vitro. Overexpression of ROR1 significantly increased gefitinib resistance of HCC827 cells in vitro. Moreover, in vivo assays also showed that knockdown of ROR1 significantly increased gefitinib sensitivity (P<0.05). Furthermore, we found that abnormal activation of AKT/FOXO1 signaling was detected in HCC827/GR cells, and knockdown of ROR1 significantly inhibited the phosphorylation of AKT, but increased the expression of FOXO1. Taken together, these results indicated that ROR1 could increase gefitinib resistance in HCC827 cells, by which mechanism is related to activation of AKT/FOXO1 signaling.

  • YANG Wen-Ping, LIU Xin-Guang
    Chinese Journal of Biochemistry and Molecular Biol. 2018, 34(2): 197-203. https://doi.org/10.13865/j.cnki.cjbmb.2018.02.11
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    MicroRNAs (miRNAs) have emerged as critical regulators for target genes expression, and thus are involved in almost all physiological and pathological processes. SIRT1 exerts critical roles in diverse biological processes through deacetylation of substrates. Nonetheless, the relationship between SIRT1 and non-coding RNAs such as miRNAs is still unknown. In this study, we initially silenced SIRT1 in HEK293 cells, and noted that miR-221 and miR-222 were significantly down-regulated using quantitative RT-PCR. Meanwhile, ectopic expression of SIRT1 enhanced miR-221/222 expression levels in  cells suggesting a the positive correlation between SIRT1 and miR-221/222. We further constructed a dual luciferase reporter vector containing the promoter of miR-221/222 cluster, which was co-transfected with SIRT1 over-expression plasmid or interference sequences of SIRT1 into the HEK293 cells. The results uncovered that SIRT1 significantly increased the miR-221/222 promoter activity, indicating that SIRT1 mightbe regulate miR-221/222 at the transcriptional level. Moreover, the Western blot analysis showed that forced expression of miR-221/222 promoted the autophagy of HEK293 cells, while inhibition of miR-221/222 decreased autophagy; Furthermore,inhibition of miR-221/222 significantly reversed the SIRT1-induced autophagy. In conclusion,SIRT1 induced autophagy in HEK293 cells by upregulating the expression of miR-221/222 to significantly promote the autophagy in HEK293 cells. Its mechanism needs to be further studied.

  • MENG Yan, ZHANG Bo, WU Yan-Fei, XIANG Huan, QIN Xue-Mei, TIAN Jun-Sheng
    Chinese Journal of Biochemistry and Molecular Biol. 2018, 34(2): 204-212. https://doi.org/10.13865/j.cnki.cjbmb.2018.02.12
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    Many people in the modern society are inflicted with depression and psychological suboptimal health. Here we analyzed the metabolic biomarkers associated with these two conditions, aiming to provide a reference for the clinical diagnosis and identification as well as the early therapeutic prevention and treatment. 18 patients with depression and 23 suboptimal health subjects were screened, and their venous blood was collected. We used the method of 1H-NMR metabolomics, combined with the univariate analysis, multivariate statistics, correlation and Fold Change (FC), and screened the endogenous differential metabolites as potential metabolic biomarkers by 1r1>0.6 and FC>1.5 as critical indicators. Metabolites including 3-OH-butyrate, acetate, alanine, betaine and carnitine and so on showed significant differences between the two groups (P<0.05, 0.01). Then the receiver operating characteristic curve (ROC) was used to assess the ability of identification and diagnosis. The area under the receiver operating characteristic curve (AUC) showed that carnitine, choline, histidine, and lipid (AUC> 0.85) had a high diagnostic value and predictive ability for associating depression and psychological suboptimal health. In summary, the present research could set up new measures for improving the accuracy and reliability of clinical diagnosis of depression. It will play a critical role in the early identification of psychological suboptimal health and prevent it from turning into mental diseases.

  • SHI Jing-Ming, RONG Hao, ZHANG Jie, LI Yan-Song, SUN Zheng-Qi
    Chinese Journal of Biochemistry and Molecular Biol. 2018, 34(2): 213-220. https://doi.org/10.13865/j.cnki.cjbmb.2018.02.13
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    Interaction of Aβ42 with the cell membrane is an important event in the pathogenesis of Alzheimer disease (AD). However, very little work has been done to examine the interaction of different aggregation states of Aβ42 with the cell membranes in combination with their toxicity. Transmission electron microscopy (TEM), membrane balance, ThT assay and cytotoxicity test showed that: (1) Aβ42 monomers can be inserted into the phospholipid monolayer whereas ADDLs do not have the membrane insertion ability; (2) Transmission electron microscopy and ThT fluorescence analysis showed that different Aβ42 aggregation states have different abilities to form fibrils. The Aβ42 monomers had the strongest fibril formation propensity, whereas the Aβ42 protofibrils also had some propensity to form fibrils. Fibril formation from Aβ42 ADDLs was difficult. (3) Aβ42 monomer cytotoxicity was weak, and the cytotoxicity of Aβ42 ADDLs and protofibrils was very strong. This result suggests that the monomer rapidly inserts into the membrane to form fibrils, thus reducing its cytotoxicity. ADDLs and protofibrils do not have the ability to insert into the membranes therefore are cytotoxic. These toxic effects are probably caused by binding to the membrane receptors. These results will provide some reference for the study of the mechanism of Aβ42 toxicity in AD. However, the mechanism of endocytosis of various Aβ oligomers still needs further study.

  • GAO Rui, ZHAN Du-Qing, DU Ming-Ming, ZHANG Yun, DONG Xin, ZHU Jing-Wen, YANG Yang, LIN Hai-Ying
    Chinese Journal of Biochemistry and Molecular Biol. 2018, 34(2): 221-228. https://doi.org/10.13865/j.cnki.cjbmb.2018.02.14
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    The Chimeric Antigen Receptor T-Cell Immunotherapy (CAR-T) plays its anti-tumor role by activating and amplifying tumor-specific or non-specific killer cells in vitro. It has a good prospect in tumor immunotherapy. In this study, a recombinant lentiviral vector encoding the antiEGFRⅢ chimeric antigen receptor (CAR) was constructed. Then a stable CAR-modified Jurkat cell line was generated using the lentivirus. When stimulated with EGFRvⅢ or U87MG, the cell line was activated, suggesting that a recombinant plasmid pCDH-EGFRvⅢ-scFv-CAR-copGFP-T2A-puro was successfully constructed and an EGFRⅢ-CAR-expressing Jurkat cell line was successfully generated. After EGFRvⅢ stimulation for 12 h, the CCK8 assay showed that the proliferation rate of CAR-Jurkat cells was about 1.36 times faster than the control group (P<0.05). After co-incubation with U87MG cells, the ELISA assay showed that the concentration of IL-2 in the cell supernatant was 1.625 times more than the control group (P <0.01). The results above showed that the EGFRvⅢ-CARexpressing Jurkat cell line specifically targets the EGFRvⅢ molecule and EGFRvⅢ-positive cells and releases IL-2 cytokine, which provides a theoretical basis for the subsequent clinical application of the cell-based immunotherapy.